pomegranate is a python package which implements fast, efficient, and extremely flexible probabilistic models ranging from probability distributions to Bayesian networks to mixtures of hidden Markov models. The most basic level of probabilistic modeling is the a simple probability distribution. If we’re modeling language, this may be a simple distribution over the frequency of all possible words a person can say.
The next level up are probabilistic models which use the simple distributions in more complex ways. A markov chain can extend a simple probability distribution to say that the probability of a certain word depends on the word(s) which have been said previously. A hidden Markov model may say that the probability of a certain words depends on the latent/hidden state of the previous word, such as a noun usually follows an adjective.
- Markov Chains
- Bayes Classifiers and Naive Bayes
- General Mixture Models
- Hidden Markov Models
- Bayesian Networks
- Factor Graphs
The third level are stacks of probabilistic models which can model even more complex phenomena. If a single hidden Markov model can capture a dialect of a language (such as a certain persons speech usage) then a mixture of hidden Markov models may fine tune this to be situation specific. For example, a person may use more formal language at work and more casual language when speaking with friends. By modeling this as a mixture of HMMs, we represent the persons language as a “mixture” of these dialects.
- Mixtures of Models
- Bayesian Classifiers of Models
pomegranate is pip installable using
`pip install pomegranate`. You can get the bleeding edge from github using the following:
git clone https://github.com/jmschrei/pomegranate cd pomegranate python setup.py install
On Windows machines you may need to download a C++ compiler. For Python 2 this minimal version of Visual Studio 2008 works well. For Python 3 this version of the Visual Studio build tools has been reported to work.
No good project is done alone, and so I’d like to thank all the previous contributors to YAHMM and all the current contributors to pomegranate as well as the graduate students whom I have pestered with ideas. Contributions are eagerly accepted! If you would like to contribute a feature then fork the master branch and be sure to run the tests before changing any code. Let us know what you want to do on the issue tracker just in case we’re already working on an implementation of something similar. Also, please don’t forget to add tests for any new functions.